Description
geniml is an agent skill for machine learning and statistical work on genomic interval sets, using the Geniml library. It treats coordinates, genome assemblies, token vocabularies, model artefacts and sample grouping as explicit contracts. The skill's bundled scripts validate inputs and plan runs, but they do not import Geniml, contact any service, deserialise models or run training. Typical tasks include validating BED files and universe contracts, planning Region2Vec or scEmbed runs, and inspecting model and tokeniser files. The skill is careful about commands. Bash is declared only for explicit, user-approved uv, Python, Geniml, Gtars, Git and native command-line steps shown in its guide. Example paths under the data, refs, work and models folders are placeholders for your own project, not files that ship with the skill. The skill records a verified release snapshot, so you can see which versions its examples were checked against. It is part of the k-dense-ai scientific agent skills repository on GitHub, which has about 49,600 stars. The listing shows it as free, and it has about 1,800 installs. Its security audits show passes from Gen Agent Trust Hub, Socket and Snyk.…
Highlights
- Validates BED files and universe contracts
- Plans Region2Vec and scEmbed runs
- Inspects model and tokeniser files
- Scripts validate and plan without running training
- Commands only with user approval
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geniml FAQ
What does geniml work on?
Sets of genomic intervals, for machine learning and statistical workflows.
Do its scripts run training?
No. The bundled scripts validate or plan. They do not import Geniml, contact services, deserialise models or run training.
What can it check?
BED files and universe contracts, plus the model and tokeniser files used by Region2Vec or scEmbed.
Does it run commands by itself?
Only explicit commands that you approve, shown in its guide.
How do I install it?
Run npx skills add https://github.com/k-dense-ai/scientific-agent-skills --skill geniml.
Is it checked for security?
Its security audits show passes from Gen Agent Trust Hub, Socket and Snyk.
What are the best geniml alternatives?
Popular alternatives to geniml include gtars, polars-bio and gget. See all geniml alternatives