Description
opentrons-integration is an agent skill for writing, reviewing, migrating, simulating and troubleshooting Opentrons Python Protocol API version 2 protocols for the Flex and OT-2 liquid-handling robots. It covers protocol structure, hardware and deck configuration, liquid handling, runtime customisation, control of modules, simulation before a run, and safe deployment. The skill is written for protocols you intend to run on real lab robots, so it stresses production-minded code. It states a verified baseline dated 1 October 2026, and it expects you to simulate protocols before running them on hardware. Use it when you are automating a pipetting or sample-prep task on an Opentrons robot, moving an older protocol to the current API, or diagnosing why a protocol fails in simulation. It is part of the k-dense-ai scientific agent skills repository on GitHub, which has about 49,600 stars. The listing shows it as free, and it has about 1,800 installs. Its security audits show passes from Gen Agent Trust Hub, Socket and Snyk. Install it with npx skills add https://github.com/k-dense-ai/scientific-agent-skills --skill opentrons-integration.…
Highlights
- Python Protocol API v2 for Flex and OT-2
- Protocol structure and deck configuration
- Liquid handling and module control
- Simulation before deployment
- Migration of older protocols
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opentrons-integration FAQ
What robots does it cover?
Opentrons Flex and OT-2, using the Python Protocol API version 2.
What can it help with?
Writing, reviewing, migrating, simulating and troubleshooting protocols, including deck configuration and module control.
Should I simulate before running?
Yes. The skill is built around simulation before deployment, so that a protocol is checked before it runs on hardware.
Does it cover older protocols?
Yes. It includes migration guidance for moving protocols to the current API.
How do I install it?
Run npx skills add https://github.com/k-dense-ai/scientific-agent-skills --skill opentrons-integration.
Is it checked for security?
Its security audits show passes from Gen Agent Trust Hub, Socket and Snyk.
What are the best opentrons-integration alternatives?
Popular alternatives to opentrons-integration include pylabrobot, data-scraper-agent and django-celery. See all opentrons-integration alternatives