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etetoolkit

Open source alternatives to etetoolkit

24 open source AI Skills apps to use instead, best rated first.

Top picks

  1. G

    github-ops

    Launch

    github-ops is an agent skill from the ECC collection by affaan-m, listed on skills.sh. It manages a GitHub repository with a focus on community health, CI reliability and the experience of contributors. It covers triaging issues by classify

    Open source

  2. O

    opensource-pipeline

    Launch

    opensource-pipeline is an agent skill from the ECC collection by affaan-m, listed on skills.sh. It prepares a private project for safe public release through a three-stage pipeline. The fork stage strips secrets from a copy. The sanitise st

    Open source

  3. A

    andrej-karpathy-skills

    Launch

    andrej-karpathy-skills is a single CLAUDE.md file from the multica-ai project that is meant to improve how Claude Code behaves on coding tasks. It is derived from Andrej Karpathy's public observations about LLM coding pitfalls. The file dis

    Open source

  4. M

    microsoft/markitdown

    Launch

    markitdown-mcp is the MCP server package for MarkItDown, Microsoft's tool for converting many file formats to Markdown for language models. It is a lightweight server that runs over stdio, Streamable HTTP or SSE, and exposes one tool, conve

    Open source

  5. O

    od-contribute

    Launch

    od-contribute is an agent skill in the OpenDesign project that provides a guided, one-click contribution flow to the OpenDesign repository, written so that people without a coding background can send a real pull request. It is locked to the

    Open source

  6. G

    github-deep-research

    Launch

    github-deep-research is an agent skill from the DeerFlow project that researches a single GitHub repository in several rounds and writes a report in Markdown. It is for requests that need more than a README summary, such as a comprehensive

    Open source

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About etetoolkit

E

etetoolkit

Analyzes, manipulates, compares, annotates

etetoolkit is an agent skill for working with phylogenetic and other hierarchical trees using ETE 4. It analyses, manipulates, compares, annotates and visualises trees. You can read Newick and Nexus tree files, inspect and annotate them, transform, root and prune them, and write them back out. It can compare topologies and calculate phylogenetic distances, find repeated subtree topologies with TreePattern, and analyse gene trees with PhyloTree. It can also query local NCBI or GTDB taxonomy databases, explore large trees interactively with SmartView, and render PNG images with SmartView or PNG, PDF and SVG output with the optional Qt tree viewer. The skill is clear about scope. ETE works with an existing tree, so it does not replace sequence alignment or phylogenetic inference software. For raw sequences you first align them, for example with MAFFT, and infer a tree with a tool such as IQ-TREE 2 or FastTree, then load the resulting tree into ETE. It is part of the k-dense-ai scientific agent skills repository on GitHub, which has about 49,600 stars. The listing shows it as free, and it has about 1,800 installs.

View etetoolkitAll AI Skills apps
Price
Free
Made by
k-dense-ai
Category
AI Skills
Website
github.com/k-dense-ai/scientific-agent-skills/etetoolkit