Open source alternatives to lamindb
24 open source AI Skills apps to use instead, best rated first.
Top picks
- G
github-ops
Getgithub-ops is an agent skill from the ECC collection by affaan-m, listed on skills.sh. It manages a GitHub repository with a focus on community health, CI reliability and the experience of contributors. It covers triaging issues by classify
Open source
- O
opensource-pipeline
Getopensource-pipeline is an agent skill from the ECC collection by affaan-m, listed on skills.sh. It prepares a private project for safe public release through a three-stage pipeline. The fork stage strips secrets from a copy. The sanitise st
Open source
- A
andrej-karpathy-skills
Getandrej-karpathy-skills is a single CLAUDE.md file from the multica-ai project that is meant to improve how Claude Code behaves on coding tasks. It is derived from Andrej Karpathy's public observations about LLM coding pitfalls. The file dis
Open source
- M
microsoft/markitdown
Getmarkitdown-mcp is the MCP server package for MarkItDown, Microsoft's tool for converting many file formats to Markdown for language models. It is a lightweight server that runs over stdio, Streamable HTTP or SSE, and exposes one tool, conve
Open source
- O
od-contribute
Getod-contribute is an agent skill in the OpenDesign project that provides a guided, one-click contribution flow to the OpenDesign repository, written so that people without a coding background can send a real pull request. It is locked to the
Open source
- G
github-deep-research
Getgithub-deep-research is an agent skill from the DeerFlow project that researches a single GitHub repository in several rounds and writes a report in Markdown. It is for requests that need more than a README summary, such as a comprehensive
Open source
More AI Skills apps
modelcontextprotocol/server-memory
Knowledge graph-based persistent memory for maintaining context
netdata/netdata#Netdata
Discovery, exploration, reporting and root cause analysis over Netdata metrics
Learn Claude Code
by shareAI-lab - A really interesting analysis of how coding agents like Claude
MCP Toolbox for Databases
MCP Toolbox for Databases enables your agent to connect to your database
About lamindb
lamindb
Manages biological datasets and models
lamindb is an agent skill for managing biological datasets and models with LaminDB. It covers registering artefacts, curating DataFrame and AnnData metadata, querying annotated artefacts, tracking lineage for scientific scripts and workflows, validating schemas, and annotating with Bionty ontologies. LaminDB keeps metadata in SQLite or PostgreSQL, and keeps the files in configured storage. The skill is clear that registration alone does not establish scientific validity or FAIR compliance. It targets LaminDB 2.10.0 and Bionty 2.5.0. The local examples were run on Python 3.12 with pandas 3.0.6 and AnnData 0.13.2, and the skill notes that this LaminDB release caps AnnData at 0.13.2, so the dependency constraints must be kept. It also says to install IPython for the registry synonym helpers, because one of them imports it in this release. Use it when you want a reproducible record of which dataset, model or script produced which result, with metadata that other people can query. It is part of the k-dense-ai scientific agent skills repository on GitHub, which has about 49,600 stars. The listing shows it as free, and it has about 1,800 installs.
- Price
- Free
- Made by
- k-dense-ai
- Category
- AI Skills
- Website
- github.com/k-dense-ai/scientific-agent-skills/lamindb