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Self-hosted alternatives to anndata

5 self-hosted AI Skills apps to use instead, best rated first.

Top picks

  1. C

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  2. O

    open-notebook

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    open-notebook is an agent skill for organising research with Open Notebook, a self-hosted alternative to NotebookLM. It arranges sources, notes and AI conversations into research notebooks. Sources can be PDFs, web pages, audio, video and O

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  3. R

    Reactive Resume

    Launch

    Reactive Resume is a free and open-source resume builder for writing resumes and cover letters, checking the work, and tracking job applications. You create a free account, import an existing resume or start from scratch, and see the finish

    Open sourceSelf-hosted

  4. S

    self-hosted-funnel-launch

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    Self-hosted funnel launch is an agent skill that takes a funnel from an empty install to published on infrastructure you control, using the Autonnel funnel builder, which is licensed Apache-2.0. The result covers a landing page, checkout, a

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  5. G

    get-convex/convex-backend

    Launch

    Convex is an open-source reactive database for web app developers. It combines a database, a place to write server functions in pure TypeScript, and client libraries that keep the app's data live, so screens update as the data changes. Beca

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About anndata

A

anndata

Handles annotated matrices in single-cell analysis, .h5ad and Zarr files

anndata is an agent skill for working with AnnData, a Python package for annotated data matrices. An AnnData object stores measurements in a main matrix, with metadata for observations and variables and multi-dimensional annotations alongside. It began in single-cell genomics through Scanpy and is now a general framework for any annotated data that needs efficient storage and analysis. The skill covers creating, reading and writing AnnData objects, working with h5ad and Zarr files, and performing single-cell RNA-seq analysis. It also covers large datasets with sparse matrices or backed mode, concatenating datasets or experimental batches, subsetting and filtering, and integrating with scanpy, scvi-tools and other tools in the scverse ecosystem. Use it when a task involves those data structures or formats. The skill is part of the k-dense-ai scientific agent skills repository on GitHub, which has about 49,600 stars. The listing shows it as free, and it has about 1,800 installs. Its security audits show passes from Gen Agent Trust Hub, Socket and Snyk. Install it with npx skills add https://github.com/k-dense-ai/scientific-agent-skills --skill anndata.

View anndataAll AI Skills apps
Price
Free
Made by
k-dense-ai
Category
AI Skills
Website
github.com/k-dense-ai/scientific-agent-skills/anndata