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bioservices

Self-hosted alternatives to bioservices

5 self-hosted AI Skills apps to use instead, best rated first.

Top picks

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  5. G

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About bioservices

B

bioservices

Provides a Python interface to bioinformatics services including UniProt, KEGG

bioservices is an agent skill that gives a Python interface to bioinformatics web services, including UniProt, KEGG, ChEMBL, Reactome, QuickGO and UniChem. It is used when you need to combine protein annotation, gene and pathway membership, compound cross-references or genomic resources in one workflow. The skill warns that the service clients share transport helpers, but their request parameters and return types differ, so you should read the service reference before composing calls. It also warns that method names from PubChemPy, mygene or older BioServices versions are not portable. The skill targets bioservices 1.16.0, the current PyPI release at the time of its review. Its package metadata allows Python 3.9 up to 4, and its bundled tests were run in an isolated Python 3.13 environment. The install command is uv pip install with bioservices pinned to 1.16.0. The skill is part of the k-dense-ai scientific agent skills repository on GitHub, which has about 49,600 stars. The listing shows it as free, and it has about 1,800 installs. Its security audits show passes from Gen Agent Trust Hub, Socket and Snyk.

View bioservicesAll AI Skills apps
Price
Free
Made by
k-dense-ai
Category
AI Skills
Website
github.com/k-dense-ai/scientific-agent-skills/bioservices