Open source alternatives to deeptools
24 open source AI Skills apps to use instead, best rated first.
Top picks
- G
github-ops
Launchgithub-ops is an agent skill from the ECC collection by affaan-m, listed on skills.sh. It manages a GitHub repository with a focus on community health, CI reliability and the experience of contributors. It covers triaging issues by classify
Open source
- O
opensource-pipeline
Launchopensource-pipeline is an agent skill from the ECC collection by affaan-m, listed on skills.sh. It prepares a private project for safe public release through a three-stage pipeline. The fork stage strips secrets from a copy. The sanitise st
Open source
- A
andrej-karpathy-skills
Launchandrej-karpathy-skills is a single CLAUDE.md file from the multica-ai project that is meant to improve how Claude Code behaves on coding tasks. It is derived from Andrej Karpathy's public observations about LLM coding pitfalls. The file dis
Open source
- M
microsoft/markitdown
Launchmarkitdown-mcp is the MCP server package for MarkItDown, Microsoft's tool for converting many file formats to Markdown for language models. It is a lightweight server that runs over stdio, Streamable HTTP or SSE, and exposes one tool, conve
Open source
- O
od-contribute
Launchod-contribute is an agent skill in the OpenDesign project that provides a guided, one-click contribution flow to the OpenDesign repository, written so that people without a coding background can send a real pull request. It is locked to the
Open source
- G
github-deep-research
Launchgithub-deep-research is an agent skill from the DeerFlow project that researches a single GitHub repository in several rounds and writes a report in Markdown. It is for requests that need more than a README summary, such as a comprehensive
Open source
More AI Skills apps
modelcontextprotocol/server-memory
Knowledge graph-based persistent memory for maintaining context
netdata/netdata#Netdata
Discovery, exploration, reporting and root cause analysis over Netdata metrics
Learn Claude Code
by shareAI-lab - A really interesting analysis of how coding agents like Claude
About deeptools
deeptools
NGS analysis toolkit
deeptools is an agent skill for NGS data analysis with deepTools, a suite of Python command-line tools for processing and analysing high-throughput sequencing data. It is used for quality control, normalising data, comparing samples, and making publication-quality plots for ChIP-seq, RNA-seq, ATAC-seq, MNase-seq and other sequencing experiments. Its core capabilities include converting BAM alignments into normalised coverage tracks in bigWig or bedGraph format, quality control such as fingerprint, correlation and coverage checks, comparing samples and correlating them, and producing heatmaps and profile plots around genomic features like transcription start sites and peaks. It also covers enrichment analysis and visualisation of peak regions. The skill is for analysts who have aligned reads and want coverage tracks or a quality assessment before comparing samples or plotting signal at features. It is part of the k-dense-ai scientific agent skills repository on GitHub, which has about 49,600 stars. The listing shows it as free, and it has about 1,800 installs. Its security audits show passes from Gen Agent Trust Hub, Socket and Snyk.
- Price
- Free
- Made by
- k-dense-ai
- Category
- AI Skills
- Website
- github.com/k-dense-ai/scientific-agent-skills/deeptools