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gget

Alternatives to gget

50 AI Skills apps to use instead, best rated first.

Top picks

  1. W

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  5. I

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  6. F

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About gget

G

gget

Gget CLI and Python workflow for quick genomic database queries

gget is an agent skill from the ECC collection by affaan-m, listed on skills.sh. It uses the gget command-line tool and Python package for quick bioinformatics lookups across genomic reference databases. Its listed uses include finding Ensembl IDs, gene metadata, transcript details and sequences, running quick BLAST or BLAT searches without building a local pipeline, fetching reference genome links and annotations, and querying protein structure, pathway, cancer, expression and disease-association modules through one interface. It is intended for a first-pass evidence log that is reproducible, before the work moves to heavier tools such as Biopython, Snakemake, Nextflow, BLAST+ or database-specific clients. The skill says not to use gget for regulated clinical interpretation, high-throughput production pipelines, or work that needs fine control over database versions and local indexes. A skill is a SKILL.md file of instructions that an AI agent loads when a task calls for it. It is free and open source, and the skills.sh listing shows all three security audits passing.

View ggetAll AI Skills apps
Price
Free
Made by
affaan-m
Category
AI Skills
Website
github.com/affaan-m/ecc/gget