latchbio-integration
Builds, registers, debugs, and operates bioinformatics workflows on Latch
by k-dense-aiFree
Description
latchbio-integration is an agent skill for building, registering, debugging and operating bioinformatics workflows on Latch. It covers the Latch Python SDK and command-line tool, Latch Data and Registry, and workflow frameworks such as Nextflow and Snakemake. The skill targets Latch SDK 2.77.1, released on 17 September 2026. Its package metadata supports Python 3.9 to 3.12. The review checked the SDK imports, documented signatures, command-line help and selected workflow examples locally on Python 3.12. Network-backed examples are illustrative, because no authenticated registration, data change, launch or MCP tool call was run in the review. The skill tells you to treat the installed package and its changelog as the authority whenever a guide disagrees with it. Some Latch guides keep older Python ranges or pre-release pins, especially the Snakemake v2 tutorial, so you must not mix commands or imports from different tracks without checking their version requirements. Use it when you are packaging an analysis as a Latch workflow, or running and debugging one. It is part of the k-dense-ai scientific agent skills repository on GitHub, which has about 49,600 stars.…
Highlights
- Build, register and debug Latch workflows
- Python SDK and command-line tool
- Latch Data and Registry
- Nextflow and Snakemake support
- Targets Latch SDK 2.77.1
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latchbio-integration FAQ
What can it do?
Build, register, debug and operate bioinformatics workflows on Latch with its Python SDK and command-line tool.
Which frameworks are covered?
Nextflow and Snakemake, along with Latch Data and Registry.
Which SDK version?
Latch SDK 2.77.1, released on 17 September 2026, with Python 3.9 to 3.12 in its package metadata.
What if a guide disagrees with the SDK?
The skill says to trust the installed package and its changelog, and to avoid mixing commands from different tracks.
How do I install it?
Run npx skills add https://github.com/k-dense-ai/scientific-agent-skills --skill latchbio-integration.
Is it checked for security?
Its security audits show passes from Gen Agent Trust Hub, Socket and Snyk.
What are the best latchbio-integration alternatives?
Popular alternatives to latchbio-integration include nextflow, pacsomatic and dnanexus-integration. See all latchbio-integration alternatives