Open source alternatives to neuropixels-analysis
24 open source AI Skills apps to use instead, best rated first.
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Getmarkitdown-mcp is the MCP server package for MarkItDown, Microsoft's tool for converting many file formats to Markdown for language models. It is a lightweight server that runs over stdio, Streamable HTTP or SSE, and exposes one tool, conve
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od-contribute
Getod-contribute is an agent skill in the OpenDesign project that provides a guided, one-click contribution flow to the OpenDesign repository, written so that people without a coding background can send a real pull request. It is locked to the
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github-deep-research
Getgithub-deep-research is an agent skill from the DeerFlow project that researches a single GitHub repository in several rounds and writes a report in Markdown. It is for requests that need more than a README summary, such as a comprehensive
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About neuropixels-analysis
neuropixels-analysis
Analyzes Neuropixels extracellular recordings end-to-end with SpikeInterface
neuropixels-analysis is an agent skill for analysing Neuropixels extracellular recordings from start to finish with SpikeInterface. It covers the full workflow from raw data to reviewed, curated units. It loads SpikeGLX, Open Ephys and NWB data, does preprocessing, corrects for drift and motion, and runs the steps that follow. The approach draws on current practice from SpikeInterface, the Allen Institute and the International Brain Laboratory. The skill targets SpikeInterface 0.105.0, ProbeInterface 0.4.0 and Neo 0.14.5, reviewed on 1 October 2026. Its synthetic tests cover recording contracts, preprocessing, analysers, metrics and exports. Real acquisition files, native sorters, GPU execution and pretrained models are described as illustrative, because they were not run. All examples use the real SpikeInterface API, together with its companion curation module. The skill ships runnable scripts and a copy-and-edit template that implement the workflow on top of SpikeInterface, so there is no separate package beyond the listed dependencies. Use it when you have high-density neural recordings and need a reproducible path through sorting and curation.
- Price
- Free
- Made by
- k-dense-ai
- Category
- AI Skills
- Website
- github.com/k-dense-ai/scientific-agent-skills/neuropixels-analysis