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neuropixels-analysis

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About neuropixels-analysis

N

neuropixels-analysis

Analyzes Neuropixels extracellular recordings end-to-end with SpikeInterface

neuropixels-analysis is an agent skill for analysing Neuropixels extracellular recordings from start to finish with SpikeInterface. It covers the full workflow from raw data to reviewed, curated units. It loads SpikeGLX, Open Ephys and NWB data, does preprocessing, corrects for drift and motion, and runs the steps that follow. The approach draws on current practice from SpikeInterface, the Allen Institute and the International Brain Laboratory. The skill targets SpikeInterface 0.105.0, ProbeInterface 0.4.0 and Neo 0.14.5, reviewed on 1 October 2026. Its synthetic tests cover recording contracts, preprocessing, analysers, metrics and exports. Real acquisition files, native sorters, GPU execution and pretrained models are described as illustrative, because they were not run. All examples use the real SpikeInterface API, together with its companion curation module. The skill ships runnable scripts and a copy-and-edit template that implement the workflow on top of SpikeInterface, so there is no separate package beyond the listed dependencies. Use it when you have high-density neural recordings and need a reproducible path through sorting and curation.

View neuropixels-analysisAll AI Skills apps
Price
Free
Made by
k-dense-ai
Category
AI Skills
Website
github.com/k-dense-ai/scientific-agent-skills/neuropixels-analysis