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nextflow-development

Open source alternatives to nextflow-development

24 open source AI Skills apps to use instead, best rated first.

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About nextflow-development

N

nextflow-development

Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data

nextflow-development is a skill from Anthropic's knowledge-work plugins, listed on skills.sh. It runs nf-core bioinformatics pipelines on sequencing data, such as RNA-seq, whole genome or exome sequencing, and ATAC-seq for chromatin accessibility. It works on local FASTQ files or public data. It is aimed at bench scientists and researchers without specialist bioinformatics training who need large-scale omics analyses such as differential expression, variant calling or accessibility analysis. The page sets out a checklist that the agent works through in order: acquire the data if it comes from GEO or SRA, pass an environment check, choose a pipeline with the user's confirmation, run a test profile that must pass, create a samplesheet, configure and run the pipeline with the genome confirmed by the user, and then verify the outputs. The listing shows Gen Agent Trust Hub and Socket as Pass, and Snyk as Warn. It suits life science researchers who have sequencing data and want a guided route to a standard analysis.

View nextflow-developmentAll AI Skills apps
Price
Free
Made by
anthropics
Category
AI Skills
Website
github.com/anthropics/knowledge-work-plugins/nextflow-development