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About omero-integration

O

omero-integration

Inspects and automates microscopy data workflows against OMERO.server

omero-integration is an agent skill for inspecting and automating microscopy data workflows against an OMERO server, using omero-py, BlitzGateway and the OMERO command-line tool. It covers tables, annotations, regions of interest, image rendering and related tasks. OMERO is an open platform for managing microscopy images and their metadata. The skill asks you to use the current OME documentation and the smallest explicit data scope, because OMERO data can include unpublished images, identifiers, annotations, original files and derived measurements. The skill was refreshed on 30 September 2026 against OMERO.server 5.6.18, released in May 2026, which is the current documented stable server. It was tested by OME with omero-py 5.22.1 and OMERO.web 5.31.0. The omero-py 5.22.1 package requires Python 3.10 or newer. The OMERO support matrix supports Python 3.10 and 3.11, recommends 3.12, and still labels 3.13 and 3.14 as upcoming. OMERO 5.6 uses IcePy 3.6, with prebuilt client wheels documented for Python versions up to 3.12. Use it when you need to script work on an existing OMERO server, such as querying images or adding annotations.

View omero-integrationAll AI Skills apps
Price
Free
Made by
k-dense-ai
Category
AI Skills
Website
github.com/k-dense-ai/scientific-agent-skills/omero-integration