Self-hosted alternatives to pubmed-database
5 self-hosted AI Skills apps to use instead, best rated first.
Top picks
- C

claude-to-deerflow
Launchclaude-to-deerflow is an agent skill that lets an assistant send messages and questions to a running DeerFlow instance through its HTTP API. DeerFlow is an AI agent platform built on LangGraph that orchestrates sub-agents for research, code
Self-hosted
- O

open-notebook
Launchopen-notebook is an agent skill for organising research with Open Notebook, a self-hosted alternative to NotebookLM. It arranges sources, notes and AI conversations into research notebooks. Sources can be PDFs, web pages, audio, video and O
Self-hosted
- R

Reactive Resume
LaunchReactive Resume is a free and open-source resume builder for writing resumes and cover letters, checking the work, and tracking job applications. You create a free account, import an existing resume or start from scratch, and see the finish
Open sourceSelf-hosted
- S

self-hosted-funnel-launch
LaunchSelf-hosted funnel launch is an agent skill that takes a funnel from an empty install to published on infrastructure you control, using the Autonnel funnel builder, which is licensed Apache-2.0. The result covers a landing page, checkout, a
Self-hosted
- G

get-convex/convex-backend
LaunchConvex is an open-source reactive database for web app developers. It combines a database, a place to write server functions in pure TypeScript, and client libraries that keep the app's data live, so screens update as the data changes. Beca
Self-hosted
About pubmed-database

pubmed-database
Direct PubMed and NCBI E-utilities search workflows for biomedical literature
pubmed-database is an agent skill from the ECC collection by affaan-m, listed on skills.sh. It runs direct searches of PubMed and NCBI E-utilities for biomedical literature, for cases where a general web search is not enough. It covers building queries with MeSH terms, field tags, dates and article types, looking up PMIDs, abstracts and publication metadata, retrieving related citations, and running repeatable search strings for systematic-review passes. It also covers calling the NCBI E-utilities from Python, shell or another HTTP client. The query method is to start from the research question, split it into concepts, and combine those concepts with Boolean operators. The skill applies when someone is searching MEDLINE or life-science literature, preparing a systematic review search, or needs a precise record for a paper. A skill is a SKILL.md file of instructions that an AI agent loads when a task calls for it. It is free and open source, and the skills.sh listing shows a Snyk warning, with Gen Agent Trust Hub and Socket passing.
- Price
- Free
- Made by
- affaan-m
- Category
- AI Skills
- Website
- github.com/affaan-m/ecc/pubmed-database