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About esm

E

esm

Uses the Biohub esm Python SDK for ESM3 protein generation, ESMC embeddings

esm is an agent skill for Biohub's esm Python SDK, which covers ESM3 protein generation, ESMC sequence embeddings and ESMFold2 all-atom structure prediction. It applies to local model inference and to Biohub's hosted services. Use it for ESM3 masked multimodal generation, for ESMC sequence representations, and for ESMFold2 folding. The former Forge platform has moved to biohub.ai, and the SDK's class names still contain the word Forge. The skill targets the released esm 3.4.1.post1 package, which it verified against the wheel and the current official documentation. It also separates related packages that people often confuse. fair-esm is Meta's separate, older ESM2, ESMFold and ESM-IF distribution. Both packages import as esm, so the skill says to install them in separate environments. The legacy esm.pretrained interface is not the Biohub ESMC interface, and Hugging Face Transformers has its own native ESMC implementation with different version requirements and output types. The skill's setup section explains how to choose a model. It is part of the k-dense-ai scientific agent skills repository on GitHub, which has about 49,600 stars.

View esmAll AI Skills apps
Price
Free
Made by
k-dense-ai
Category
AI Skills
Website
github.com/k-dense-ai/scientific-agent-skills/esm