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primekg

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About primekg

P

primekg

Queries a pinned Precision Medicine Knowledge Graph

primekg is an agent skill for querying a pinned Precision Medicine Knowledge Graph, PrimeKG, from its CSV files. It finds typed gene, drug, disease and phenotype nodes, direct associations, disease context and recorded pathway, anatomy and phenotype links. It is for reproducing PrimeKG analyses, resolving entities in a specific graph file, and exploring the recorded associations. The skill says a path through the graph supports a research hypothesis only. It does not establish causality, treatment efficacy, a prescribing recommendation or a diagnosis. The published PrimeKG integrates 20 resources, with about 129,000 nodes and about 4.05 million undirected relationships. Its CSV files contain reverse rows, so row counts differ from the number of distinct undirected relationships, and the skill tells you to count the actual pinned file. The upstream project now recommends OptimusKG for new work, and this skill stays scoped to PrimeKG CSV files. The first step is to pin and verify the input file. It is part of the k-dense-ai scientific agent skills repository on GitHub, which has about 49,600 stars. The listing shows it as free, and it has about 1,700 installs.

View primekgAll AI Skills apps
Price
Free
Made by
k-dense-ai
Category
AI Skills
Website
github.com/k-dense-ai/scientific-agent-skills/primekg