Open source alternatives to scvelo
24 open source AI Skills apps to use instead, best rated first.
Top picks
- G
github-ops
Launchgithub-ops is an agent skill from the ECC collection by affaan-m, listed on skills.sh. It manages a GitHub repository with a focus on community health, CI reliability and the experience of contributors. It covers triaging issues by classify
Open source
- O
opensource-pipeline
Launchopensource-pipeline is an agent skill from the ECC collection by affaan-m, listed on skills.sh. It prepares a private project for safe public release through a three-stage pipeline. The fork stage strips secrets from a copy. The sanitise st
Open source
- A
andrej-karpathy-skills
Launchandrej-karpathy-skills is a single CLAUDE.md file from the multica-ai project that is meant to improve how Claude Code behaves on coding tasks. It is derived from Andrej Karpathy's public observations about LLM coding pitfalls. The file dis
Open source
- M
microsoft/markitdown
Launchmarkitdown-mcp is the MCP server package for MarkItDown, Microsoft's tool for converting many file formats to Markdown for language models. It is a lightweight server that runs over stdio, Streamable HTTP or SSE, and exposes one tool, conve
Open source
- O
od-contribute
Launchod-contribute is an agent skill in the OpenDesign project that provides a guided, one-click contribution flow to the OpenDesign repository, written so that people without a coding background can send a real pull request. It is locked to the
Open source
- G
github-deep-research
Launchgithub-deep-research is an agent skill from the DeerFlow project that researches a single GitHub repository in several rounds and writes a report in Markdown. It is for requests that need more than a README summary, such as a comprehensive
Open source
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Learn Claude Code
by shareAI-lab - A really interesting analysis of how coding agents like Claude
About scvelo
scvelo
Performs RNA velocity analysis
scvelo is an agent skill for RNA velocity analysis with scVelo, which works from spliced and unspliced single-cell RNA counts. It fits deterministic or dynamical models, examines gene phase portraits and estimates dynamical latent time. Use it for kinetic analysis of aligned counts, for directional trajectory hypotheses, and for gene-level phase portraits. For model assumptions, transition probabilities and an optional handoff to CellRank, the skill points to a model reference. The skill is careful about what RNA velocity means. It estimates an expression derivative under a model. Smooth arrows are not observed cell movement, lineage tracing, causal drivers or proof of a cell's future fate. The dynamical estimator is not automatically more accurate than the steady-state estimator on every dataset. The maintained workflow targets scVelo 0.3.4, with Scanpy 1.12.4, AnnData 0.13.4, NumPy 2.5.3, pandas 2.3.3, SciPy 1.18.1, Matplotlib 3.11.2 and loompy 3.0.8 on Python 3.13, and the skill advises an isolated environment. It is part of the k-dense-ai scientific agent skills repository on GitHub, which has about 49,600 stars. The listing shows it as free, and it has about 1,800 installs.
- Price
- Free
- Made by
- k-dense-ai
- Category
- AI Skills
- Website
- github.com/k-dense-ai/scientific-agent-skills/scvelo