AI Skills

pacsomatic

Prepares and launches nf-core/pacsomatic matched tumor-normal PacBio HiFi

paper-lookup

Searches 18 scholarly APIs for papers, preprints, citations

paperzilla

Reads projects, searches project feeds

parallel-web

Uses Parallel CLI for web search, URL extraction, deep research

pathml

Supports local computational pathology research

pathway-enrichment

Performs pathway

pdf

Do anything with PDF files

peer-review

Prepares evidence-bounded

pennylane

Builds and differentiates PennyLane quantum circuits

phylogenetics

Builds and analyzes phylogenetic trees

polars

High-performance DataFrame library for Python ETL, analytics

polars-bio

Performs genomic interval overlap, nearest, merge, coverage

pptx

Use this skill any time a .pptx or .potx file is involved in any way

pptx-posters

Creates and audits editable scientific posters in macro-free PowerPoint

primekg

Queries a pinned Precision Medicine Knowledge Graph

pufferlib

Version-aware guidance for PufferLib reinforcement-learning environments

pydeseq2

Performs bulk RNA-seq differential expression analysis

pydicom

Reads, inspects, writes, transforms

pyhealth

Builds and validates PyHealth clinical machine-learning pipelines for EHR

pymatgen

Analyzes, validates, converts

pymc

Builds and checks Bayesian models

pymoo

Solves and validates single-, multi-, and many-objective optimization

pyopenms

Processes mass spectrometry data with pyOpenMS

pysam

Provides Python/HTSlib workflows for genomic files

pytdc

Provides Therapeutics Data Commons workflows through PyTDC

pytorch-lightning

Deep learning framework (PyTorch Lightning / lightning package)

pyzotero

Manages Zotero reference libraries

qiskit

Builds, simulates, transpiles, and executes quantum circuits

qutip

Simulate and audit closed and open quantum-system models

rdkit

Cheminformatics toolkit for fine-grained molecular control

research-grants

Supports research proposal preparation and review for NSF, NIH, DOE, DARPA

research-lookup

Compiles current scholarly evidence

rowan

Rowan is a cloud-native molecular modeling and medicinal-chemistry workflow

scanpy

Performs Scanpy single-cell RNA-seq QC, normalization, HVG selection

scholar-evaluation

Provides qualitative-first

scientific-brainstorming

Facilitates evidence-aware scientific ideation

scientific-critical-thinking

Evaluates scientific claims and evidence quality

scientific-schematics

Generates scientific diagram drafts using Nano Banana 2 AI

scientific-slides

Builds slide decks and presentations for research talks

scientific-visualization

Creates and audits truthful, accessible

scientific-writing

Drafts, revises, and audits scientific manuscripts or reports

scikit-bio

Biological data toolkit

scikit-learn

Supports machine learning in Python with scikit-learn

scikit-survival

Builds, evaluates

scvelo

Performs RNA velocity analysis

scvi-tools

Fits probabilistic models for single-cell omics

seaborn

Creates Seaborn statistical visualizations

shap

Explain and audit machine-learning predictions with SHAP

simpy

Builds, inspects, tests

stable-baselines3

Trains and evaluates single-agent reinforcement learning with Stable Baselines3