AI Skills

etetoolkit

Analyzes, manipulates, compares, annotates

exa-search

Searches scientific and technical web content

experimental-design

Designs experiments and studies BEFORE data is collected

exploratory-data-analysis

Performs bounded, local exploratory analysis of explicitly supported scientific

flowio

Reads, inspects, and writes Flow Cytometry Standard

fluidsim

Plans, configures, inspects, restarts

generate-image

Generates or edits images with AI models through the OpenRouter Image API

geniml

Supports audited local Geniml genomic-interval workflows: validate BED

geomaster

Supports geospatial research workflows for remote sensing

geopandas

Guidance and local audit tools for Python workflows

get-available-resources

Detects host inventory and effective CPU, memory, disk, scheduler, container

gget

Queries 20+ bioinformatics resources through CLI/Python

ginkgo-cloud-lab

Guides protocol selection, input preparation, pricing checks

glycoengineering

Analyzes and engineers protein glycosylation

gtars

Supports Gtars for local genomic interval models and set algebra

histolab

Extracts and preprocesses whole-slide histology image tiles with Histolab

hugging-science

Discovers and evaluates scientific datasets, models, methodology posts

hypogenic

Plans and audits use of ChicagoHAI HypoGeniC/HypoRefine

hypothesis-generation

Formulates evidence-bounded scientific questions, candidate hypotheses

imaging-data-commons

Queries and downloads public cancer imaging data from NCI Imaging Data Commons

infographics

Creates and reviews infographics with Nano Banana 2 via OpenRouter

json-canvas

Create and edit JSON Canvas files

knap

Render Markdown from templates and structured data using Knap CLI

labarchive-integration

Integrates with the official LabArchives ELN REST-like API and Inventory API v1

lamindb

Manages biological datasets and models

latchbio-integration

Builds, registers, debugs, and operates bioinformatics workflows on Latch

latex-posters

Creates research posters in LaTeX using beamerposter, tikzposter, or baposter

liteparse

Local document and PDF parsing that returns spatial text with bounding boxes

literature-review

Conducts systematic, scoping, and narrative literature reviews

markdown-mermaid-writing

Writes scientific Markdown documentation and Mermaid diagrams for workflows

market-research-reports

Builds evidence-traceable market research reports

markitdown

Converts heterogeneous documents and selected URIs to Markdown

matchms

Processes, cleans, compares, and searches tandem mass spectra with matchms

matlab

Builds, reviews, migrates, and plans MATLAB or GNU Octave numerical workflows

matplotlib

Creates and customizes scientific plots with Matplotlib

medchem

Applies medicinal chemistry filters for compound triage

modal

Modal is a serverless cloud platform for running Python on demand

molecular-dynamics

Runs and analyzes molecular dynamics simulations with OpenMM and MDAnalysis

molfeat

Featurizes small molecules

networkx

Creates, analyzes, and visualizes complex networks and graphs in Python

neurokit2

Builds and audits reproducible NeuroKit2 research workflows

neuropixels-analysis

Analyzes Neuropixels extracellular recordings end-to-end with SpikeInterface

nextflow

Builds, runs, and debugs Nextflow DSL2 pipelines and nf-core workflows

obsidian-bases

Create database-like views of Obsidian notes using .base files

obsidian-cli

Read, create, search, and manage Obsidian vault notes via CLI

obsidian-markdown

Create and edit Obsidian Flavored Markdown

omero-integration

Inspects and automates microscopy data workflows against OMERO.server

open-notebook

Organizes research with the self-hosted Open Notebook alternative to NotebookLM

opentrons-integration

Authors, reviews, migrates, simulates

optimize-for-gpu

GPU-accelerates scientific Python on NVIDIA hardware and verifies